
genewise output
Score 27.35 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00000079_2.0    2 GRARPGQRGPPSPGPAAQPP-APPR                         
                     GR  PG RG   P   AQPP APPR                         
                     GRTSPGPRGSRRPLTRAQPPPAPPR                         
gi|432034144|gb85348 gaatcgcagacaccaagccccgccc                         
                     ggcccgcgggggctcgcaccccccg                         
                     cgccaccagccgtccgcgcccccgt                         


//
>gi|432034144|gb|KB168745.1|:subseq(1989667,100134).pep
GRTSPGPRGSRRPLTRAQPPPAPPR
//
>gi|432034144|gb|KB168745.1|:subseq(1989667,100134).[85348:85422].sp
GGCAGGACCTCCCCAGGCCCCAGAGGGAGCCGCAGGCCTCTCACCAGGGCCCAGCCCCCC
CCCGCCCCCCCGCGT
//
gi|432034144|gb|KB168745.1|:subseq(1989667,100134)	GeneWise	match	85348	85422	27.35	+	.	gi|432034144|gb|KB168745.1|:subseq(1989667,100134)-genewise-prediction-1
gi|432034144|gb|KB168745.1|:subseq(1989667,100134)	GeneWise	cds	85348	85422	0.00	+	0	gi|432034144|gb|KB168745.1|:subseq(1989667,100134)-genewise-prediction-1
//

genewise output
Score 922.87 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00000079_2.0   64 ALKTLGTDGLFLFSSLDTDGDMYISPEEFKPIAEKLTGSCSVTQTGVQW 
                     +LKTLGT+GLFLFSSLDTD D+Y+SPEEF P+AEKLTG+    +      
                     xLKTLGTEGLFLFSSLDTDRDLYLSPEEFGPLAEKLTGTGRAGRE--EG 
gi|432034144|g-53154 Ncaacgaggctcttttgagcgctcacggtgccggacagagcggcg  gg 
                     ctactgcagttttcctacagatatgcaatgctcaatcgcggcgga  ag 
                     tggcgggacccccccgcccgtgccccggcgcccgggatcgggggg  ga 


SPP00000079_2.0  113 CSHSSLQPQ                          PWLNXSSCLSLLRS 
                       H   Q                            P       L L+ S 
                     ARHRPAQGA          L:G[ggg]        PLH-----LCLVGS 
gi|432034144|g-53013 gacccgcggGGTCTGCG  Intron 1   CAGGGccc     ctcggt 
                     cgagccagc <1-----[52985:50164]-1>  cta     tgttgc 
                     cgccgcgtg                          tct     gtcaga 


SPP00000079_2.0  137 TPAASCEEEELPPDPSEETLTIEARFQPLLPETMTKSKDGFLG       
                     TP AS EEEELPPDPSEETLTIEARFQPLLPE+MTKSKDGFLG       
                     TPTASYEEEELPPDPSEETLTIEARFQPLLPESMTKSKDGFLG       
gi|432034144|g-50134 acagatggggcccgcaggacaaggctcccccgtaaaaaggtcg       
                     ccccgaaaaatccacgaactctacgtacttcactcagaagttg       
                     ttacccgggggctcccggaccaacacgtgcggcgcgcatgcag       


SPP00000079_2.0  180                        VSRLALSGLRNWTAAASPSAVFATRH 
                                            VSRLALSGLRNWT AASP A FA RH 
                                            VSRLALSGLRNWTTAASPRAQFAARH 
gi|432034144|g-50005 GTGAGTT  Intron 2   CAGgtccgctgccataaggtccgctggcc 
                     <0-----[50005:48042]-0>tcgtctcgtgagccccccgcatccga 
                                            cccgcgtccccgacacgatagtcccc 


SPP00000079_2.0  206 FQPFLPPPGQ-ELGEPWWIIPSELSMFTGYLSNNRFYPPPPKGKE     
                     F+PFLPP GQ ELGEPWWIIPSELS+FTGYLSNNRFYPPPPKGKE     
                     FRPFLPPRGQAELGEPWWIIPSELSVFTGYLSNNRFYPPPPKGKE     
gi|432034144|g-47963 tcctccccgcggcggcttaacagcagtagtttaacttccccagag     
                     tgcttccggacatgacggttcgatgttcgatcaagtaccccagaa     
                     cgccccggcgaggcgcggccctggccccctgccccccgaacgagg     


SPP00000079_2.0  250                        VIIHRLLSMFHPRPFVKTRFAPQGAV 
                                            VIIHRLLSMFHPRPFVKTRFAPQGAV 
                                            VIIHRLLSMFHPRPFVKTRFAPQGAV 
gi|432034144|g-47828 GTGAGGG  Intron 3   TAGgaaccccaatcccctgaactgccggg 
                     <0-----[47828:47664]-0>tttagttgttacgcttacgtccagct 
                                            ccccgggcgccggccggcctcgggag 


SPP00000079_2.0  276 ACLTAISDFYYTVMF                          IHAEFQLS 
                     AC+TA+SDFYYTVMF                          IHAEFQLS 
                     ACVTAVSDFYYTVMF           R:R[cgg]       IHAEFQLS 
gi|432034144|g-47585 gtgaggagtttagatCGGTGAGCG  Intron 4   CAGGacggtcca 
                     cgtcctgataacttt  <2-----[47538:47040]-2> tacatatg 
                     ccgagcccccccggc                          cccgcgcc 


SPP00000079_2.0  300 EPPDFPFWFSPAQFTGHIILSKDATHVRDFRLFVPNH             
                     EPPDFPFWFSP QFTGHI+LSKDATHVRDFRLFVPNH             
                     EPPDFPFWFSPGQFTGHIVLSKDATHVRDFRLFVPNH             
gi|432034144|g-47014 gccgtcttttcgctagcagctaggacgcgtcctgcac             
                     accatctgtccgatcgatttcaaccatgatgtttcaa             
                     ggcccccgcgccgccccccccatcccgtccgccgccc             


SPP00000079_2.0  337                           SLNVDMEWLYGASESSNMEVDIG 
                                               SLNVDMEWLYGASE+SNMEVDIG 
                                R:R[agg]       SLNVDMEWLYGASENSNMEVDIG 
gi|432034144|g-46903 AGGTGGGAA  Intron 5   CAGGtcaggagtctggagaaaagggag 
                       <2-----[46901:45299]-2> ctatatagtagcgaagatatatg 
                                               tgtgcggggtgctgcctgggccc 


SPP00000079_2.0  361 YIPQ                       MELEATGPSVPSVILDEDGSMI 
                     YIPQ                       MELEATGPS+PSVI+DEDG+MI 
                     YIPQ                       MELEATGPSIPSVIMDEDGNMI 
gi|432034144|g-45228 taccGTGAGCG  Intron 6   TAGagcggagctactgaaggggaaa 
                     atca<0-----[45216:44833]-0>tataccgcctcctttaaagatt 
                     cacg                       ggggcaccaaccgcgtgtccgt 


SPP00000079_2.0  387 DSHLPSGEPLQFVFEEIKWQQELSWEEAARRLEVAMYPFKK         
                     DS LPSGEPLQFVFEEI+WQQELSWEEAARRLEVAMYPF K         
                     DSRLPSGEPLQFVFEEIRWQQELSWEEAARRLEVAMYPFMK         
gi|432034144|g-44766 gaccctggccctgtggaatccgcatggggcccgggatctaa         
                     aggtccgactatttaatggaaatggaaccggtatctactta         
                     cccgcgggccgtgtggcggggggcgggtcgcgggcgcccgg         


SPP00000079_2.0  428                        VSYLPFTEAFDRAKAENKLVHSILLW 
                                            V+YLPFTEAFD+AKA+NKLVHSILLW 
                                            VTYLPFTEAFDQAKAKNKLVHSILLW 
gi|432034144|g-44643 GTGAGGC  Intron 7   CAGgatcctaggtgcgagaaacgctacct 
                     <0-----[44643:44307]-0>tcatctcactaacacaaattactttg 
                                            cccgaccgcccacgcgcgggcgcggg 


SPP00000079_2.0  454 GALDDQSCX                          SGRTLRETVLESSP 
                     GALDDQSCX                          SGRTLRETVLESSP 
                     GALDDQSCX          G:G[ggt]        SGRTLRETVLESSP 
gi|432034144|g-44228 ggcggctttGGTGAGTG  Intron 8   CAGGTtgcaccgagcgatc 
                     gctaaacgg <1-----[44200:43182]-1>  cggctgacttagcc 
                     gcgccgcca                          cggtcgggcgatgc 


SPP00000079_2.0  478 ILTLLNESFISTWSLVKELEELQ                       NNQ 
                     +L LLNESFISTWSLVKELE+L+                       NN+ 
                     VLALLNESFISTWSLVKELEDLR                       NNR 
gi|432034144|g-43137 gcgccagataaattcgagcggccGTGAGTG  Intron 9   CAGaac 
                     ttcttaagttgcgcttaataatg<0-----[43068:42976]-0>aag 
                     ctgcccgcctccgcggggggcga                       ccg 


SPP00000079_2.0  504 ENSSHQKLAGLHLEKYSFPVEMMICLPNGTV                   
                     EN SH+KLA LHLEKYSFPVEMMICLPNGTV                   
                     ENPSHKKLADLHLEKYSFPVEMMICLPNGTV                   
gi|432034144|g-42966 gactcaacggcccgatatcggaaatccagag                   
                     aaccaaatcatataaagtctatttgtcagct                   
                     gccccgggacgcgggccccggggccgctccg                   


SPP00000079_2.0  535                        VHHINANYFLDITSVKPEEIESNLFS 
                                            VHHINAN+FLDITS++PE++E++ FS 
                                            VHHINANHFLDITSMRPEDVENSAFS 
gi|432034144|g-42873 GTAGGTC  Intron 10  CAGgccaagacttgaataacggggaagta 
                     <0-----[42873:41671]-0>taatacaattatcctgcaataagctg 
                                            cccccccccgccccggcgcggccccc 


SPP00000079_2.0  561 FSSTFEDPSTATYMQFLKEGLRRGLPLLQP                    
                     F+STFEDPSTATY+QFLKEGLRRGLPLLQP                    
                     FASTFEDPSTATYLQFLKEGLRRGLPLLQP                    
gi|432034144|g-41592 tgtatggctagatcctcaggcccgcccccc                    
                     tccctaacccccatattaagtgggtcttac                    
                     cacctacgcgcgcggcgggccgccgcccgc                    


//
Making a G in phase 1 intron
Making a R in phase 2 intron
Making a R in phase 2 intron
Making a G in phase 1 intron
>gi|432034144|gb|KB168745.1|:subseq(1989667,100134).pep
xLKTLGTEGLFLFSSLDTDRDLYLSPEEFGPLAEKLTGTGRAGREEGARHRPAQGAGPLH
LCLVGSTPTASYEEEELPPDPSEETLTIEARFQPLLPESMTKSKDGFLGVSRLALSGLRN
WTTAASPRAQFAARHFRPFLPPRGQAELGEPWWIIPSELSVFTGYLSNNRFYPPPPKGKE
VIIHRLLSMFHPRPFVKTRFAPQGAVACVTAVSDFYYTVMFRIHAEFQLSEPPDFPFWFS
PGQFTGHIVLSKDATHVRDFRLFVPNHRSLNVDMEWLYGASENSNMEVDIGYIPQMELEA
TGPSIPSVIMDEDGNMIDSRLPSGEPLQFVFEEIRWQQELSWEEAARRLEVAMYPFMKVT
YLPFTEAFDQAKAKNKLVHSILLWGALDDQSCXGSGRTLRETVLESSPVLALLNESFIST
WSLVKELEDLRNNRENPSHKKLADLHLEKYSFPVEMMICLPNGTVVHHINANHFLDITSM
RPEDVENSAFSFASTFEDPSTATYLQFLKEGLRRGLPLLQP
//
>gi|432034144|gb|KB168745.1|:subseq(1989667,100134).[53154:41501].sp
NCTCTGAAGACCCTGGGGACGGAAGGCCTCTTCCTCTTCTCCTCCTTGGACACCGACCGG
GATCTGTACCTCAGCCCCGAGGAGTTCGGGCCCCTCGCCGAGAAGCTGACAGGTACCGGG
CGGGCGGGGCGGGAGGAGGGAGCCAGGCACCGCCCGGCCCAGGGTGCGGGGCCTCTCCAT
CTGTGTCTCGTAGGGTCAACTCCTACAGCCAGCTACGAGGAGGAGGAGCTGCCCCCTGAC
CCCAGCGAGGAGACACTCACCATAGAAGCCCGATTCCAGCCTCTGCTCCCGGAGTCCATG
ACCAAGAGCAAAGATGGGTTCCTAGGGGTCTCCCGCCTGGCCCTGTCTGGCCTCCGCAAC
TGGACAACCGCAGCCTCGCCACGTGCACAGTTTGCCGCCCGCCACTTCCGGCCCTTCCTC
CCCCCGCGGGGCCAGGCAGAGCTGGGCGAGCCCTGGTGGATCATCCCCAGTGAGCTGAGC
GTCTTCACCGGCTATTTGTCCAACAACCGCTTCTACCCGCCACCACCCAAGGGAAAGGAG
GTCATCATCCACCGGCTGCTGAGCATGTTCCACCCGCGGCCCTTCGTGAAGACCCGCTTT
GCCCCGCAGGGGGCAGTGGCCTGCGTGACAGCGGTCAGCGACTTCTACTACACCGTGATG
TTCCGGATCCACGCCGAGTTCCAGCTCAGCGAGCCGCCCGACTTCCCCTTCTGGTTCTCG
CCCGGCCAGTTCACCGGCCACATCGTCCTCTCCAAAGATGCCACCCACGTGCGTGACTTC
CGGCTCTTCGTGCCCAACCACAGGTCTCTGAATGTGGACATGGAGTGGCTGTATGGGGCC
AGTGAGAACAGCAATATGGAGGTGGACATCGGCTACATACCCCAGATGGAGCTGGAGGCC
ACAGGCCCCTCAATACCCTCCGTGATCATGGATGAGGATGGCAACATGATTGACAGCCGC
CTGCCCTCGGGGGAGCCCCTCCAGTTTGTGTTTGAGGAGATCAGGTGGCAGCAGGAGCTG
AGCTGGGAGGAGGCTGCCCGGCGCCTGGAGGTGGCCATGTACCCCTTCATGAAGGTCACC
TACCTGCCATTCACCGAGGCCTTCGACCAAGCCAAGGCCAAGAACAAGCTGGTGCACTCG
ATCCTGCTGTGGGGGGCCCTGGACGACCAGTCCTGCTGAGGTTCCGGGCGGACTCTCCGG
GAGACGGTCCTGGAAAGTTCGCCCGTCCTTGCGCTCCTCAACGAGAGCTTCATTAGCACC
TGGTCCCTGGTGAAGGAGCTGGAGGACCTGCGAAACAACCGGGAGAACCCCTCCCACAAG
AAGCTGGCAGACCTGCACCTGGAGAAGTACAGCTTCCCCGTGGAGATGATGATCTGCCTG
CCCAATGGCACCGTGGTCCACCACATCAACGCCAACCACTTCTTGGACATCACCTCCATG
AGGCCCGAGGACGTGGAGAACAGCGCCTTCAGCTTCGCATCCACCTTTGAAGACCCGTCC
ACGGCCACGTACCTGCAGTTCCTGAAGGAGGGCCTCCGGCGCGGCCTGCCCCTCCTCCAG
CCC
//
gi|432034144|gb|KB168745.1|:subseq(1989667,100134)	GeneWise	match	53154	41503	927.86	-	.	gi|432034144|gb|KB168745.1|:subseq(1989667,100134)-genewise-prediction-1
gi|432034144|gb|KB168745.1|:subseq(1989667,100134)	GeneWise	cds	53154	52986	0.00	-	0	gi|432034144|gb|KB168745.1|:subseq(1989667,100134)-genewise-prediction-1
gi|432034144|gb|KB168745.1|:subseq(1989667,100134)	GeneWise	intron	52985	50164	0.00	-	.	gi|432034144|gb|KB168745.1|:subseq(1989667,100134)-genewise-prediction-1
gi|432034144|gb|KB168745.1|:subseq(1989667,100134)	GeneWise	cds	50163	50006	0.00	-	2	gi|432034144|gb|KB168745.1|:subseq(1989667,100134)-genewise-prediction-1
gi|432034144|gb|KB168745.1|:subseq(1989667,100134)	GeneWise	intron	50005	48042	0.00	-	.	gi|432034144|gb|KB168745.1|:subseq(1989667,100134)-genewise-prediction-1
gi|432034144|gb|KB168745.1|:subseq(1989667,100134)	GeneWise	cds	48041	47829	0.00	-	0	gi|432034144|gb|KB168745.1|:subseq(1989667,100134)-genewise-prediction-1
gi|432034144|gb|KB168745.1|:subseq(1989667,100134)	GeneWise	intron	47828	47664	0.00	-	.	gi|432034144|gb|KB168745.1|:subseq(1989667,100134)-genewise-prediction-1
gi|432034144|gb|KB168745.1|:subseq(1989667,100134)	GeneWise	cds	47663	47539	0.00	-	0	gi|432034144|gb|KB168745.1|:subseq(1989667,100134)-genewise-prediction-1
gi|432034144|gb|KB168745.1|:subseq(1989667,100134)	GeneWise	intron	47538	47040	0.00	-	.	gi|432034144|gb|KB168745.1|:subseq(1989667,100134)-genewise-prediction-1
gi|432034144|gb|KB168745.1|:subseq(1989667,100134)	GeneWise	cds	47039	46902	0.00	-	1	gi|432034144|gb|KB168745.1|:subseq(1989667,100134)-genewise-prediction-1
gi|432034144|gb|KB168745.1|:subseq(1989667,100134)	GeneWise	intron	46901	45299	0.00	-	.	gi|432034144|gb|KB168745.1|:subseq(1989667,100134)-genewise-prediction-1
gi|432034144|gb|KB168745.1|:subseq(1989667,100134)	GeneWise	cds	45298	45217	0.00	-	1	gi|432034144|gb|KB168745.1|:subseq(1989667,100134)-genewise-prediction-1
gi|432034144|gb|KB168745.1|:subseq(1989667,100134)	GeneWise	intron	45216	44833	0.00	-	.	gi|432034144|gb|KB168745.1|:subseq(1989667,100134)-genewise-prediction-1
gi|432034144|gb|KB168745.1|:subseq(1989667,100134)	GeneWise	cds	44832	44644	0.00	-	0	gi|432034144|gb|KB168745.1|:subseq(1989667,100134)-genewise-prediction-1
gi|432034144|gb|KB168745.1|:subseq(1989667,100134)	GeneWise	intron	44643	44307	0.00	-	.	gi|432034144|gb|KB168745.1|:subseq(1989667,100134)-genewise-prediction-1
gi|432034144|gb|KB168745.1|:subseq(1989667,100134)	GeneWise	cds	44306	44201	0.00	-	0	gi|432034144|gb|KB168745.1|:subseq(1989667,100134)-genewise-prediction-1
gi|432034144|gb|KB168745.1|:subseq(1989667,100134)	GeneWise	intron	44200	43182	0.00	-	.	gi|432034144|gb|KB168745.1|:subseq(1989667,100134)-genewise-prediction-1
gi|432034144|gb|KB168745.1|:subseq(1989667,100134)	GeneWise	cds	43181	43069	0.00	-	2	gi|432034144|gb|KB168745.1|:subseq(1989667,100134)-genewise-prediction-1
gi|432034144|gb|KB168745.1|:subseq(1989667,100134)	GeneWise	intron	43068	42976	0.00	-	.	gi|432034144|gb|KB168745.1|:subseq(1989667,100134)-genewise-prediction-1
gi|432034144|gb|KB168745.1|:subseq(1989667,100134)	GeneWise	cds	42975	42874	0.00	-	0	gi|432034144|gb|KB168745.1|:subseq(1989667,100134)-genewise-prediction-1
gi|432034144|gb|KB168745.1|:subseq(1989667,100134)	GeneWise	intron	42873	41671	0.00	-	.	gi|432034144|gb|KB168745.1|:subseq(1989667,100134)-genewise-prediction-1
gi|432034144|gb|KB168745.1|:subseq(1989667,100134)	GeneWise	cds	41670	41503	0.00	-	0	gi|432034144|gb|KB168745.1|:subseq(1989667,100134)-genewise-prediction-1
//
